- #R MAC OS MOJAVE CAN NO LONGER COMPILE PACKAGES FROM SOURCE INSTALL#
- #R MAC OS MOJAVE CAN NO LONGER COMPILE PACKAGES FROM SOURCE UPGRADE#
- #R MAC OS MOJAVE CAN NO LONGER COMPILE PACKAGES FROM SOURCE SOFTWARE#
Trying URL ' /src/co ntrib/VIM_6.1.1.tar.gz 'Ĭontent type 'application/x-gzip' length 2193653 bytes (2.1 MB)
#R MAC OS MOJAVE CAN NO LONGER COMPILE PACKAGES FROM SOURCE INSTALL#
There is a binary version available but the sourceĭo you want to install from sources the package which needs compilation? (Yes/no/cancel) y
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> e-mail: Roy.Mendelssohn using www: > "Old age and treachery will overcome youth and skill." > Supervisory Operations Research Analyst > "The contents of this message do not reflect any position of the U.S. > and voila packages that had failed to compile just a few minutes ago compiled successfully. > /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg \ > The following is in some of the docs, but just in case it helps, cause it took me awhile to find it, after installing the Command Line Tools for Xcode, you should run:
#R MAC OS MOJAVE CAN NO LONGER COMPILE PACKAGES FROM SOURCE UPGRADE#
I was pretty certain my Makevars files was correct, as I had been compiling before the upgrade successfully, and the compilers hadn't changed. > I recently updated to Mojave and all of a sudden I was getting header not found errors when trying to compile packages. > On Mar 30, 2019, at 2:21 PM, Roy Mendelssohn - NOAA Federal via R-SIG-Mac wrote: Does it mean some Xcode version is lacking headers? Which version, how did you install it? > thanks, but can you give some details? I'm on a Mojave system and don't see any issues - this will likely depend on your Xcode installation.
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> On Apr 4, 2019, at 12:26 PM, Simon Urbanek wrote: > Restarted RStudio, asked it to check for package updates, same packages appeared, compilation went fine. Compilation failed with errors of couldn't find the appropriate header files. > Next time I ran RStudio, two package upgrades were from source (I apologize I don't remember which packages). > To be certain I had the Command lIne Tools, in a terminal I ran: sudo xcode-select -install > Ran Xcode, so that it would install "Other Components" which it often does with a new version. > Upgrades in App Store said there was a new version of Xcode (among other things). > I upgraded to 10.14.4, by the usual means, did nothing special.
#R MAC OS MOJAVE CAN NO LONGER COMPILE PACKAGES FROM SOURCE SOFTWARE#
Also, the Upgrade Section of App Store was telling me there was an incompatible version of software available, which was a new version of Xcode.
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I was compiling packages from source no problem. I was running 10.13.xx, xx being whatever was the most recent version. > On Apr 4, 2019, at 4:19 PM, Roy Mendelssohn - NOAA Federal via R-SIG-Mac wrote: It will work as long as you use the command line tools (recommended) - if you use Xcode directly you may need to check its location with xcrun -show-sdk-path PKG_CPPFLAGS='-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' Probably the fastest fix for now if you just need to install a package is to set From my tests so far that location is valid all the way down to 10.11 so should work for us. I'll see if I can release a new build of clang that will use it automatically. isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdkĪnd hope that Apple will maintain the non-versioned symlink to the SDK. So, similar to the R-admin suggestions all that's needed is
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Library/Frameworks (framework directory) System/Library/Frameworks (framework directory) usr/local/clang6/lib/clang/6.0.0/include Whereas out clang6 build uses the system location: Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/System/Library/Frameworks (framework directory) Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk/usr/include Library/Developer/CommandLineTools/usr/include Library/Developer/CommandLineTools/usr/lib/clang/10.0.0/include "/Library/Developer/CommandLineTools/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.14.0 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk Apple's macOS 10.14 clang builds automatically insert the path to the SDK: It is a combination of the removal of headers from system location *and* our custom toolchain.